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:this project pioneers a new paradigm of General Genome Interpretation (GenGI) models by combining DNA Large Language Models (DLLMs) with Deep Neural Networks to predict human phenotypes directly from Whole Exome
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, machine learning and deep learning. The project Motivation: Interpreting the genome means modeling the relationship between genotype and phenotype, which is the fundamental goal of biology. Achieving
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) enables computations to be performed directly on encrypted data without knowledge of the deciphering key, offering significant potential for privacy-preserving deep learning. However, conventional neural
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structures and corresponding images) needed for training and validating deep learning (DL) models. Work closely with members of the ICMN nanostructures group or external collaborators. Communicate research
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) signal processing, machine/deep-learning and computational linguistics. The team mobilizes them to produce methodologically sound research in response to some of the challenges posed by the nature and
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Essential skills, knowledge and experience: Experience with machine/deep learning development Data-Centric AI Knowledge Notions of cybersecurity and networks are optional Spoken and written English Desirable
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, Python, Bash). Good level on machine learning. Good level of written and oral English. Ease in a multidisciplinary environment, taste for teamwork, interpersonal skills. Scientific curiosity
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demonstrated by publications in international venues in machine learning, AI for science, graph learning or related areas Solid expertise in deep learning, with experience in at least one of the following
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and obsessive-compulsive disorders), and to optimise neuromodulation therapies such as deep brain stimulation. The team combines intracranial recordings and EEG, brain imaging, brain stimulation
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, computational mechanics, computer science, applied mathematics or similar Strong experience with deep learning, e.g. PyTorch, JAX, TensorFlow, and probabilistic methods Familiarity with graph neural networks