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equipment used by multiple researchers (e.g., DNA and RNA extraction rooms, PCR machines, instruments to measure concentration and integrity of nucleic acids, and knowledge of best practices for down-stream
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, Illumina (Illumina protein prep) and MesoScale Diagnostics. The team constists of research engineers and researchers and we are working closely with the sequencing platform NGI at Uppsala University for some
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, proteomics, long-read sequencing). Familiarity with machine learning approaches, particularly artificial neural networks, and their application to biological data. Experience with workflow management systems
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antibody sequences for functional testing. The doctoral student project and the duties of the doctoral student In this PhD project, the student will use and develop new tools for multimodal data to study
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biology, genomics/bioinformatics, systems genetics, or closely related field. Demonstrable expertise in at least two of: High‑throughput sequencing assays (ATAC‑Seq, ChIP‑Seq, BS‑Seq/EM‑Seq, RNA‑Seq
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. Additional Merits: Ability to measure metabolic parameters using Seahorse XF. Ability to perform western blots, RNA sequencing, and PCR. Ability to culture islet cells and clonal cells. Ability to perform
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at least two of: High‑throughput sequencing assays (ATAC‑Seq, ChIP‑Seq, BS‑Seq/EM‑Seq, RNA‑Seq); library prep and QC. Chromatin conformation (Hi‑C/Micro‑C) and analysis of TADs/compartments/loops
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Giacomello. Examples of tasks: Design, perform, and optimize experimental workflows for ST, SmT and single-cell multiomics Prepare and process animal and plant tissue samples for spatial and sequencing-based
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, Sanger sequencing and phylogenetic analysis of viral sequence data Previous experience of research (e.g. research preparatory courses/ experience of work in research project or similar) Working with
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of nucleic acid samples from environmental samples. Nucleic acid extractions: DNA and RNA, quantification and quality controls after extraction. PCR and qPCR and preparations for sequencing. Use of flow